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Pull requests: tskit-dev/tskit

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Pull requests list

Update documentation for Tajima's D-- diversity and divergence
#3328 opened Nov 18, 2025 by andrewkern Loading…
document divergence matrix; clarify genetic_relatedness_matrix
#3327 opened Nov 17, 2025 by petrelharp Loading…
1
1
Alignments using C API
#3326 opened Nov 14, 2025 by benjeffery • Draft
1
Allow duplicate nodes in variant decoding
#3325 opened Nov 13, 2025 by benjeffery Loading…
1
4
Add tsk_treeseq_decode_alignments
#3324 opened Nov 12, 2025 by benjeffery • Draft
1
6
Add tests for bad mutation parents
#3321 opened Nov 12, 2025 by benjeffery Loading…
1
2
Add link-ancestors to TreeSequence and ImmutableTableCollection
#3312 opened Nov 4, 2025 by benjeffery • Draft Python 1.0
1
9
Add json+binary codec
#3306 opened Oct 24, 2025 by benjeffery Loading…
16
Decoding haplotypes without trees
#3298 opened Oct 16, 2025 by benjeffery • Draft
3
time windows for general_stat (branch mode)
#3271 opened Sep 16, 2025 by petrelharp • Draft
1
Unifying stat method desc and linking to math summary
#3005 opened Sep 28, 2024 by gregorgorjanc Loading… Python 0.6.5
5
Support all-nodes matching in LSHMM
#2861 opened Oct 12, 2023 by jeromekelleher • Draft
1
Add tests for genotype imputation
#2815 opened Aug 7, 2023 by szhan Loading…
3 of 6 tasks
Python 0.6.5
1
@szhan
28
Add docs discussing how to get a matrix of pairwise comparisons
#2776 opened Jul 5, 2023 by hyanwong Loading… Python 0.6.5
4
Generic iterator class for trees and variants
#2762 opened Jun 13, 2023 by hyanwong • Draft
2 of 3 tasks
Python 0.6.5
1
1
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