CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
Statistical classifier for immune repertoires
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
An R package to analyze single-cell V(D)J data
Comparison of Adaptive Immune Receptor Repertoires
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
WES HLA Typing based on multiple alternative tools
🐶 hlabud: HLA genotype analysis in R
Fast string distance computation in Python
Sequence-based prediction of peptide-TCR interactions using paired chain data
Highly informative TCR representation model
Standardise TR/MH/IG data
Bayesian inference of Activation of TCR by Mutant Antigens
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
Fast trie-based search for TCR sequences with Levenshtein and substitution matrix support
Comparison of gene usage in immune repertoires under different biological conditions
Accompanying Repository to TCR-TRANSLATE paper.
ESMDesign uses ESM-IF1 for the design of fragments within multichain proteins
Add a description, image, and links to the immunoinformatics topic page so that developers can more easily learn about it.
To associate your repository with the immunoinformatics topic, visit your repo's landing page and select "manage topics."