Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission

Biophysically detailed model of somatosensory thalamocortical circuit (Borges et al accepted)

Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018)

Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)

Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)

NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)

Python scripts supporting a tutorial on the Hodgkin-Huxley model.

LIP and FEF rhythmic attention model (Aussel et al. 2023)

Sodium potassium ATPase pump (Chapman et al. 1983)

Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)

Ion concentration dynamics as a mechanism for neuronal bursting (Barreto & Cressman 2011)

Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011)

Gamma genesis in the basolateral amygdala (Feng et al 2019)

Squid axon: Bifurcation analysis of mode-locking (Lee & Kim 2006) (Gangal & Dar 2014)

A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)

Parallel Tempering MCMC on Liu et al 1998 (Wang et al 2022)

Reduction of nonlinear ODE systems possessing multiple scales (Clewley et al. 2005)

Markov Chain-based Stochastic Shielding Hodgkin Huxley Model (Schmandt, Galan 2012)

A phantom bursting mechanism for episodic bursting (Bertram et al 2008)

A model of antennal lobe of bee (Chen JY et al. 2015)