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Pull requests: soedinglab/MMseqs2

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Pull requests list

Allow more than 2^32 sequences to be clustered
#1039 opened Sep 29, 2025 by martin-steinegger Loading…
SIMDe: update to v0.8.4-rc1+0faa907b2
#1022 opened Jul 27, 2025 by mr-c Loading…
1
Added AVX512 intrinsics-based Ungapped SW alignent kernel
#983 opened Apr 14, 2025 by gsc74 Loading…
createsubdb supports list of indexes as an input
#957 opened Feb 19, 2025 by sooyoung-cha Loading…
Change createdb.cpp so that it takes in ".txt" file containing paths of different fasta files
#879 opened Aug 26, 2024 by elpis51613 Loading…
3
alignproteome added
#875 opened Aug 18, 2024 by martin-steinegger Loading…
33
NEXT LINCLUST
#873 opened Aug 14, 2024 by ChunShow Loading…
13
Allow passing different values for nucleotide and aminoacid for spacedKmers
#867 opened Jul 25, 2024 by elpis51613 Loading…
fix bad memory allocation with initX
#787 opened Dec 6, 2023 by gamcil Loading…
make it so that pairaln requires only .idx_mapping if .idx input is used
#694 opened Apr 19, 2023 by xeniorn Loading…
Fix gff2db segfault, and keep entryname in lookup when multithreaded
#635 opened Nov 3, 2022 by RuoshiZhang Loading…
Add createdb support for sequence db input
#545 opened Mar 2, 2022 by matchy233 Loading…
9
CMakeLists.txt: Properly handle cpu flags
#533 opened Feb 13, 2022 by Nowa-Ammerlaan Loading…
4
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