Public Health Alliance for Genomic Epidemiology
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hAMRonization
hAMRonization PublicParse multiple Antimicrobial Resistance Analysis Reports into a common data structure
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pipeline-resources
pipeline-resources PublicBioinformatics Pipeline and Visualization resources
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sars-cov-2-contextual-data-specification
sars-cov-2-contextual-data-specification PublicCollection template and associated materials for SARS-CoV-2 metadata
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hAMRonization-workflow
hAMRonization-workflow PublicHarmonization of AMR predictor tool outputs
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Repositories
- primaschema Public Forked from bede/primaschema
Infrastructure for tiled amplicon PCR primer scheme definitions
pha4ge/primaschema’s past year of commit activity - genotyping-specification Public
A data specification for harmonizing microbial typing contextual data. The specification provides standardized (ontology-based) fields and terms which can be implemented in tooling, with supporting guidance.
pha4ge/genotyping-specification’s past year of commit activity - wastewater-guidance Public
pha4ge/wastewater-guidance’s past year of commit activity - hAMRonization Public
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
pha4ge/hAMRonization’s past year of commit activity - wastewater-contextual-data-specification Public Forked from cidgoh/Wastewater_Contextual_Data_Specification
A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.
pha4ge/wastewater-contextual-data-specification’s past year of commit activity - hpai-contextual-data-specification Public Forked from cidgoh/HPAI_Contextual_Data_Specification
This data specification harmonizes contextual data to support H5N1 monitoring with PHA4GE. It provides standardized, ontology-based fields and terms for comprehensive surveillance. Users can implement it via their preferred tools, including DataHarmonizer. Field and reference guides, along with curation and new term request SOPs, support its use.
pha4ge/hpai-contextual-data-specification’s past year of commit activity
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