Department of Microbiome Science at the MPI for Biology
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SynTracker
SynTracker PublicSynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
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pyTecanFluent
pyTecanFluent PublicPython interface to TECAN Fluent liquid handling robot
Repositories
- StrainVis Public
A Python-based web application for interactive visual analysis of strain-tracking methods
leylabmpi/StrainVis’s past year of commit activity - SynTracker Public
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
leylabmpi/SynTracker’s past year of commit activity - sel_trans_behavior Public
Essential code of the Suzuki, T. et al "Selection and transmission of the gut microbiome alone can shift mammalian behavior" publication.
leylabmpi/sel_trans_behavior’s past year of commit activity - FlaPro Public
leylabmpi/FlaPro’s past year of commit activity - SynTrackerVis Public
SynTrackerVis: a Python-based web application for interactive visual analysis of SynTracker's results
leylabmpi/SynTrackerVis’s past year of commit activity - global-methanogen-strain-diversity Public
R notebooks and data for strain-level and pangenome analysis of human gut methanogens based on metagenomic and isolate genome sequencing across diverse populations
leylabmpi/global-methanogen-strain-diversity’s past year of commit activity - shortbred Public Forked from biobakery/shortbred
ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.
leylabmpi/shortbred’s past year of commit activity
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