Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 178 followers
- Stanford University
- https://kundajelab.github.io/
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      chrombpnetchrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet) 
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      atac_dnase_pipelinesatac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline 
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-           scATAC-reprog PublicCode for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" by Nair, Ameen et al. kundajelab/scATAC-reprog’s past year of commit activity 
-           gp_mouse Publickundajelab/gp_mouse’s past year of commit activity 
-           Fi-NeMo PublicIdentifying transcription factor binding sites from neural network contribution scores kundajelab/Fi-NeMo’s past year of commit activity 
-           bpnet PublicToolkit to train base-resolution deep neural networks on functional genomics data and to interpret them kundajelab/bpnet’s past year of commit activity 
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