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Update pygplates-getting-started.ipynb #7

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3f5ea85
Update pygplates-getting-started.ipynb
foreverStudent001 Jan 8, 2025
905b203
Update README.md
foreverStudent001 Jan 8, 2025
f99624b
Update pygplates-getting-started.ipynb
foreverStudent001 Jan 8, 2025
beab774
Update tut.py
foreverStudent001 Jan 8, 2025
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -26,6 +26,7 @@ in the top level folder of this repository(pygplates-tutorials)
`` docker run -it --rm -p 8888:8888 -v `pwd`:/workspace gplates/pygplates-tutorials ``

Note that this sets up Docker to display notebooks in your current working directory (where you cloned or downloaded the Github repository).
Also note: 'pwd' may be replaced with the full path to local project repo if there is an issue with docker run command, in particular if no files show up in localhost web GUI of jupyter workspace

### Step 4: Open the notebooks in a web browser

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6 changes: 3 additions & 3 deletions libs/tut.py
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Expand Up @@ -13,7 +13,7 @@

import plate_tectonic_utils, velocity_utils

data_root = 'Data/workshop/'
data_root = '../data/workshop/'
coastlines_filename = data_root+'Coastlines/Global_coastlines_2015_v1_low_res.shp'
continental_polygons_filename = data_root+'ContinentalPolygons/Seton_etal_ESR2012_ContinentalPolygons_2012.1.gpmlz'
topology_filenames = []
Expand Down Expand Up @@ -49,7 +49,7 @@ def __init__(self):
self.anchor_plate = 0
self.delta_time = 5.
Path("./tmp").mkdir(parents=True, exist_ok=True)
if not os.path.isdir('Data'):
if not os.path.isdir('../data'):
raise Exception('The Data folder is not found! Try `ln -s ../data Data` in the "notebooks" folder.')


Expand Down Expand Up @@ -353,7 +353,7 @@ def plot_layers(self, layers, ax):


def plot_earthquakes(self, ax, minmag=0.0, maxmag=100.0):
earthquakes = pygplates.FeatureCollection('Data/workshop/Earthquakes/earthquakes_new1.shp')
earthquakes = pygplates.FeatureCollection('../data/workshop/Earthquakes/earthquakes_new1.shp')

cm = plt.cm.get_cmap('gnuplot')

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8 changes: 4 additions & 4 deletions notebooks/pygplates-getting-started.ipynb
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Expand Up @@ -49,7 +49,7 @@
],
"source": [
"# Names of input rotation file\n",
"input_rotation_filename = 'Data/Seton_etal_ESR2012_2012.1.rot'\n",
"input_rotation_filename = '../data/Seton_etal_ESR2012_2012.1.rot'\n",
"\n",
"# Input parameters to define how the reconstruction is made\n",
"reconstruction_time = 40.\n",
Expand Down Expand Up @@ -94,15 +94,15 @@
"outputs": [],
"source": [
"# Names of input files\n",
"input_feature_filename = 'Data/Seton_etal_ESR2012_Coastlines_2012.1_Polygon.gpmlz'\n",
"input_rotation_filename = 'Data/Seton_etal_ESR2012_2012.1.rot'\n",
"input_feature_filename = '../data/Seton_etal_ESR2012_Coastlines_2012.1_Polygon.gpmlz'\n",
"input_rotation_filename = '../data/Seton_etal_ESR2012_2012.1.rot'\n",
"\n",
"# Input parameters to define how the reconstruction is made\n",
"reconstruction_time = 120.6\n",
"anchor_plate = 0\n",
"\n",
"# Name of ouput file\n",
"output_reconstructed_feature_filename = '/tmp/tmp.shp'\n",
"output_reconstructed_feature_filename = './tmp/tmp.shp'\n",
"\n",
"# Use pygplates to carry out the reconstruction \n",
"pygplates.reconstruct(input_feature_filename, input_rotation_filename, output_reconstructed_feature_filename, \n",
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