Skip to content

Navigation Menu

Appearance settings

10XGenomics

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

10x Genomics

Verified
We've verified that the organization 10XGenomics controls the domain:
- 10xgenomics.com
Learn more about verified organizations

272 followers
https://10xgenomics.com
opensource@10xgenomics.com

Overview
Repositories
Projects
Packages
People
Sponsoring

More

Overview
Repositories
Projects
Packages
People
Sponsoring

Pinned Loading

cellranger cellranger Public

10x Genomics Single Cell Analysis

Rust 436 101
loupeR loupeR Public

Convert Seurat objects to 10x Genomics Loupe files.

R 142 16
spaceranger spaceranger Public

Rust 15 3

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C C++ Go Jupyter Notebook Python R Rust Shell TeX TypeScript

Sort

Select order

Last updated Name Stars

Showing 10 of 75 repositories

websummary Public
Generate an HTML report in Rust

10XGenomics/websummary’s past year of commit activity

Rust 5 0 0 2 Updated Nov 4, 2025
scan-rs Public
Single-cell analysis methods in Rust

10XGenomics/scan-rs’s past year of commit activity

Rust 27 1 1 1 Updated Nov 4, 2025
orbit Public
Rust wrapper for STAR aligner

10XGenomics/orbit’s past year of commit activity

C 18 MIT 4 0 5 Updated Nov 4, 2025
spatialdata-io Public Forked from scverse/spatialdata-io

10XGenomics/spatialdata-io’s past year of commit activity

Python 3 BSD-3-Clause 48 0 0 Updated Oct 30, 2025
bamtofastq Public
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

10XGenomics/bamtofastq’s past year of commit activity

Rust 66 MIT 7 17 7 Updated Oct 27, 2025
analysis_guides Public
10x Genomics analysis guides files

10XGenomics/analysis_guides’s past year of commit activity

Jupyter Notebook 20 14 1 0 Updated Oct 24, 2025
intel-mkl-src Public Forked from rust-math/intel-mkl-src
Redistribute Intel MKL as a crate

10XGenomics/intel-mkl-src’s past year of commit activity

Rust 1 25 0 5 Updated Oct 24, 2025
txg-mcp Public

10XGenomics/txg-mcp’s past year of commit activity

TypeScript 0 MIT 0 0 2 Updated Oct 20, 2025
FIt-SNE Public Forked from KlugerLab/FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

10XGenomics/FIt-SNE’s past year of commit activity

C++ 0 116 0 1 Updated Sep 24, 2025
hdf5-rust Public Forked from aldanor/hdf5-rust
HDF5 for Rust

10XGenomics/hdf5-rust’s past year of commit activity

Rust 0 Apache-2.0 101 0 1 Updated Sep 23, 2025

View all repositories

People

Top languages

Rust Python C Go C++

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.