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Achievement: Pull Sharkx4Achievement: Pair ExtraordinaireAchievement: Public SponsorAchievement: YOLOAchievement: Quickdraw

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jarosado0911/README.md

Typing SVG

Applied Mathematician Software Engineer Cryptologic Mathematician Mathematics Teacher

Hi there fork, star ⭐, or clone my repos, if there is an issue please file an issue(s)....

My repositories reflect open-source efforts in mesh generation, neuron modeling, and scientific computing infrastructure. Contact me through jarosado0911@yahoo.com or jarosado0911@gmail.com, please look around ...

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Dev Quote

Certifications & Courses

KodeKloud Certificate Udemy Certificate

Languages & Tools

Languages
Languages 		ML / Data
ML / Data
Dev & VCS
Dev & VCS 		Platforms & Services
Platforms & Services

About

With over a decade across government, academia, and applied research, I build software at the intersection of mathematics, neuroscience, and computing. I hold a Ph.D. in Mathematics (Temple University) and currently serve as an applied mathematician & software engineer at the U.S. Department of Defense.

  • Real-time virtual neuron simulators (Unity) & mesh generation tools (C++/Python)
  • Parallel/HPC pipelines (MPI, OpenMP) and secure, high-performance scientific computing
  • Applied cryptologic algorithms & full-stack workflows (GitHub, CMake, CI/CD, SonarCloud)

Selected projects below.

 Neuron Viewer (Unity/C++ tooling)

Mesh Generation

  • Generated surface meshes for neuron geometries.
  • Next: improve branch-point & soma resolution.
  • Roadmap: add a UGX viewer and produce watertight meshes.
 Surface mesh generation preview

Parallel Transport Frame (PTF) Surfaces

Pipeline: raw 3D path → spline interpolation → PTF surface along the curve → watertight mesh target.

 Parallel Transport Frame surface demo

Calcium Simulations (UG4)

  • Exploring UG4 scripts for calcium dynamics.
  • Multiple UG4 project examples included for study and extension.
 Calcium simulation (UG4)

Electrical Dynamics (Hodgkin–Huxley)

  • MATLAB scripts for HH-based electrical dynamics simulations.
  • Time-stepping schemes (e.g., SBDF2) and analysis workflows.
 Hodgkin–Huxley simulation (MATLAB)

Selected Projects

Core & Tools Collaborations
  • 🌩️ Neuro-VISOR: VR + real-time neuron simulation
  • 🔧 CalcSim: Neuronal calcium simulation toolkit
  • 🔌 NeMo-TMS: Transcranial Magnetic Stimulation modeling
  • 🦎 ug4Projects: Assorted UG4 simulation projects
Language / Software Logo Language / Software Logo Language / Software Logo
Python Bash (Shell) C / C++
Markdown Unity CMake
MATLAB PowerShell Jupyter Notebook
Visual Studio Code Linux Windows
macOS LaTeX Anaconda
GitHub Actions GitLab Bitbucket
Microsoft Word Microsoft PowerPoint Microsoft Outlook
Ansible Xilinx FPGA Advantage
Mentor Graphics NEURON (Yale)

Pinned Loading

  1. UG4/ugcore UG4/ugcore Public

    The core functionality of UG4. Includes sources, build-scripts, and utility scripts.

    C++ 36 24

  2. UG4/ughub UG4/ughub Public

    UG4's package manager. Please use ughub to install all the other packages available in the UG4 group.

    Python 10 12

  3. NeuroBox3D/neuromorpho NeuroBox3D/neuromorpho Public

    Making use of the REST API (NeuroMorpho.org v7) to query the database

    Python 13 3

  4. OpitzLab/NeMo-TMS OpitzLab/NeMo-TMS Public

    Multi-Scale Neuron Modeling

    MATLAB 13 8

  5. stephanmg/vr-grids stephanmg/vr-grids Public

    Grids for virtual reality

    Shell 3 1

  6. c2m2/c2m2.github.io c2m2/c2m2.github.io Public

    Documentation repo for Temple University's C2M2 Virtual Reality Computational Simulation Interface Project

    HTML 1